Peer-review Publications
(Google scholar, ResearchGate, # are co-first author, and * are corresponding author)
- 5. Julie George*, Jing Shan Lim*, Se Jin Jang , Yupeng Cun, ...., , Elisabeth Brambilla, Martin Peifer, Julien Sage & Roman K. Thomas, Comprehensive genomic profiles of small cell lung cancer, Nature (2015) doi:10.1038/nature14664
- 4. Yupeng Cun#, Holger Fröhlich (2014), netClass: An R-package for network based, integrative biomarker signature discovery, Bioinformatics:30(9) 1325-1326, doi: 10.1093/bioinformatics/btu025 (R package)
- 3. Yupeng Cun, Holger Fröhlich (2013), Network and Data Integration for Biomarker Signature Discovery via Network Smoothed T-Statistics, PLoS ONE 8(9): e73074. doi:10.1371/journal.pone.0073074. (R package)
- 2. Yupeng Cun, Holger Fröhlich (2012), Prognostic Gene Signatures for Patient Stratification in Breast Cancer – Accuracy, Stability and Interpretability of Gene Selection Approaches Using Prior Knowledge on Protein-Protein Interactions, BMC Bioinformatics, 13:69
- 1. Yupeng Cun, Holger Fröhlich (2012), Biomarker Gene Signature Discovery Integrating Network Knowledge, Biology 1, no. 1: 5-17.
PhD thesis
Yupeng Cun, Network-Based Biomarker Discovery: Development of Prognostic Biomarkers for Personalized Medicine by Integrating Data and Prior Knowledge, 2014, University Bonn.
Conference Posters and Presentations:
- Yupeng Cun, Holger Fröhlich: (2014) Network and Data Integration for Biomarker Signature Discovery via Network Smoothed T-Statistics, poster for 13 "European Conference on Computational Biology", 7-10 September, 2014, Strasbourg, France
- Yupeng Cun, (2012) Integrating Prior Knowledge Into Prognostic Biomarker Discovery, Dagstuhl Seminar on "Structure Discovery in Biology: Motifs, Networks and Phylogenies" at LZI Schloss Dagstuhl, July 15 to July 20, 2012, Schloss Dagstuhl, Germany.
- Yupeng Cun, Holger Fröhlich: (2011) Comparison of feature selection approaches to stratify patients according to their clinical prognosis, poster for "Statistical and dynamical models in biology and medicine", October 27-28, 2011, University Göttingen, Germany.
- Yupeng Cun, Holger Fröhlich: (2011) Prognostic Gene Signatures for Patient Stratification in Breast Cancer - Accuracy, Stability and Interpretability of Gene Selection Approaches Using Prior Knowledge on Protein-Protein Interactions, Poster for "EMBO|EMBL Symposium: Cancer Genomics", 09/17-19/2011, Heidelberg.
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